# this is an example annotation file with which you can colour your sequences/ideograms # # everything is space separated # # the first part is the sequence name, and if you have spaces please use only the first part, e.g. 'mysequence1' from 'mysequence1 Arabidopsis protein 1' # - or even better, run Circoletto once, and use the output of the 'see the sequence name changes Circoletto may had to make' link # # the second part is the colour you want to give to the whole ideogram, e.g. representing sequence families or generic groups etc # - you NEED to write something, so either use '-' for default (~white for queries, dark grey for the database), or enter a simple colour # ! please see below for a list of accepted colour names # # from there onwards, you can enter as many domains as you want coloured on your sequences # the format is simple, from-to:colour (with the :colour optional, if you omit it the default black is used) # # so... mysequence1 red 20-30:green 60-80 mysequence2 red 20-30:green 60-80 mysequence3 - 10-20 90-150:blue mysequence4 - 10-20 90-150:blue # please use these colour names in the annotation file, e.g. 'grey', 'lred', 'dgreen' (the numeric part is the RGB code) # # optblue = 55,133,221 # optgreen = 55,221,125 # optyellow = 221,215,55 # optorange = 221,164,55 # optred = 221,55,55 # optviolet = 145,55,221 # optpurple = 219,55,221 # # white = 255,255,255 # vvvvlgrey = 250,250,250 # vvvlgrey = 240,240,240 # vvlgrey = 230,230,230 # vlgrey = 220,220,220 # lgrey = 210,210,210 # grey = 200,200,200 # dgrey = 170,170,170 # vdgrey = 140,140,140 # vvdgrey = 100,100,100 # vvvdgrey = 70,70,70 # vvvvdgrey = 40,40,40 # black = 0,0,0 # # vlred = 255,193,200 # lred = 255,122,137 # red = 247,42,66 # dred = 205,51,69 # # vlgreen = 204,255,218 # lgreen = 128,255,164 # green = 51,204,94 # dgreen = 38,153,71 # # vlblue = 128,176,255 # lblue = 64,137,255 # blue = 54,116,217 # dblue = 38,82,153 # # vlpurple = 242,128,255 # lpurple = 236,64,255 # purple = 189,51,204 # dpurple = 118,32,128 # # vlyellow = 255,253,202 # lyellow = 255,252,150 # yellow = 255,255,0 # dyellow = 191,186,48 # # lime = 186,255,0 # # vlorange = 255,228,193 # lorange = 255,187,110 # orange = 255,136,0 # dorange = 221,143,55 # # acen = 217,47,39 # stalk = 100,127,164